Bookmarks

Bookmarks Toolbar Folder

University of Virginia Home Page

Linux

Rpmfind.Net / Rufus
Freshmeat.net
REDHAT.COM
Linux Links - The Linux Portal Site
Linux Documentation Project
Red Hat Network
LinWiz - Linux IPTABLES Configuration Wizards
Security Quick-Start HOWTO for Red Hat Linux
RPM Search
PBone RPM Search Form
Common UNIX Printing System
BASH Programming - Introduction HOW-TO: All about redirection
ATrpms
RPM Search
PBone RPM Search Form

CCP4

CCP4 Program Suite
CCP4 Newsletters
CCP4 Bulletin Board Archive

Perl

PERL: Introduction to PERL
PerlMeme
PERL -- Practical Extraction and Report Language
Perl Regular Expressions
Regular Expressions in Perl
Uploading Files Using CGI and Perl [CGI & Perl Tutorials]
Create a file upload facility on your Website, and enable your users to upload content to your Web server. Matt's step-by-step guide gives you the nuts and bolts you need to build your own file uploader.
Picking Up Perl - Table of Contents
Where and how to start learning Perl
The CPAN Search Site - search.cpan.org
The Perl Monks Guide to the Monastery
Beginning Perl for Bioinformatics
0596000804 - Beginning Perl for Bioinformatics - This book shows biologists with little or no programming experience how to use Perl, the ideal language for biological data analysis. Each chapter focuses on solving a particular problem or class of problems, so you'll finish the book with a solid understanding of Perl basics, a collection of programs for such tasks as parsing BLAST and GenBank, and the skills to tackle more advanced bioinformatics programming.
Main Page - BioPerl
Perl Style Guide
BigNoseBird.Com's Server Side Include Page ( SSI)
BigNoseBird.Com's Server Side Include Page. Learn how to make your pages a lot more interactive
CGI Programming 101: Chapter 1: Getting Started
ActiveState Tool Corp.: Support: Mailing List Charter
ActiveState Tool Corp. (formerly ActiveWare) was founded in 1997 to create Perl solutions on Win32 platforms and to help the freeware community help itself by contributing a wide range of free binary run-time products while developing high-end tools and support for professionals.
The Fool's Guide to CGI.pm, the Perl module for CGI scripting

Supplies and Ordering

Hampton Research
MiTeGen :: Microtechnologies for Structural Genomics

Crystallography

Crystallography Programs

Shelx
HKL Research, Inc.
Sharp
SnB Home Page
Solve
MOSFLM help and guidance
Phaser Crystallographic Software
BnP Home Page
Lafire : an automatic refinement software
MOKs RPM Repository
Yale CNS
BALBES
ProtSkin
LABELIT
http://phillips-lab.biochem.wisc.edu/citations.html
Documentation

Tools and Servers

SER: New Job Submission
Midwest Center for Structural Genomics
ISFI Website
BioInfoBank Institute - Home Page
X-ray Anomalous Scattering
Crystal Twinning Server
Chemicool Periodic Table
Molprobity
Rostlab.org
PDBsum - A database of the known 3D structures of proteins and nucleic acids
Toward Automation of Structure Determination
IGS homepage
TLS Motion Determination Home
Purdue Structure-Group
Welcome to TargetDB
PSIPRED Protein Structure Prediction Server
SER Admin: Admin: Overview
Matthews Probability Calculator
SER: Batch Job Submission
Structure alignment
The ConSurf Server
This site, the web server, enables the identification of functionally important regions on the surface of the protein or domain, of known three-dimensional structur e, based on the phylogenetic relations of its close homologues. Homologues are automatically collected from the SWISSPROT and TREMBL databases, multiply alligned using CLUSTALW and phylogenetic tree(s) are constructed using PROTPARS. Finally, conservation grades are calculated for each residue in the query sequence based on the phylogenetic tree(s) and mapped on the molyecule by a color-coding scheme onto the Van-der-Waals surface of the protein.
TB Structural Genomics Consortium - Home
NESG - Northeast Structural Genomics consortium
DisMeta - Disorder Prediction MetaSever
PSI Structural Genomics Knowledgebase
The Protein Structure Initiative Structural Genomics Knowledgebase (PSI SGKB) is designed to turn the products of the Protein Structure Initiative effort into knowledge that is important for understanding living systems and disease.
WikiHome - JotSpot Wiki (jcsgwiki)
XtalPred Server: Home
Prediction of Protein Crystallizability
Pfam: Home page
Pfam is a large collection of protein families, represented by multiple sequence alignments and hidden Markov models (HMMs)
A Hypertext Book of Crystallographic Space Group Diagrams and Tables
Bilbao Crystallographic Server
Fiser Lab - Albert Einstein College of Medicine
Dali server

Theory, Techniques and Teaching

Martyn Winn: TLS refinement
(IUCr-Crystallographic Education Online) Educational Resources
On-Line Brief Teaching Edition of Patterson Peaks Tables
X-ray diffraction data collection
UVA X-ray lab
Crystallization and Heavy Atom Screening
Welcome to BR's Macromolecular Crystallography Website
XRayView: A Teaching Aid for X-Ray Crystallography
Software for Crystallography
Interactive guide to diffraction ..
Cheshire cells
The interactive course of crystallography
Rigaku Americas -- Products -- Protein crystallization
Rigaku Americas Corporation is a supplier of analytical and industrial instrumentation, including X-ray spectrometry, diffraction and small molecule and protein crystallography.
Heavy atom derivatives
Preparing A Useful Derivative
The Self Rotation Function

PDB Links

The Protein Data Bank
Autodep Input Tool
AutoDep - PDB Network Submission Tool
Continue AutoDep
Crystallographic Data Validation

Argonne

Argonne User Registration
Argonne Guest House
SER-CAT: Southeast Regional Collaborative Access Team
APS - ESAF
ANL Facility Registration System
Enterprise Rent-A-Car: Rental cars at everyday low rates. Rent a car today!
Live view - SER-CAT BM
Live view - SER-CAT ID

Superscreen
JCSG+ Screen

Manuals

The Coot User Manual: Table of Contents
FR591 Technical user manual
Indonesia Manual
MOSFLM 6.2.5 User Guide
TOPTOC - PyMolWiki
New Mosflm GUI

CHTSB: Products & Services
JCSG_+_Suite
JCSG-Core-I-Suite.pdf (application/pdf Object)

Libraries and Journals

PubMed
VIRGO--The UVA Library
(IUCr) Crystallography Journals Online
Structure Online
University of Virginia Health Sciences Library
Proteins: Structure, Function, and Bioinformatics
Acta Cryst via UVA
Find Journals
Science Podcasts

Other UVA Things

Network Registration at U.Va. Homepage
2008LargeConferenceRoom
Premier.Dell.com - Login
The Graphic Identity for the University of Virginia
Learn about the University of Virginia's graphic identity, including logo, font and colors.
Wireless at U.Va.
Wireless is an innovative technology that allows you to make a computer connection to the University network without the physical restrictions of being plugged into a wall outlet. With the wireless LAN (Local Area Network) deployment at U.Va., computing becomes even more portable-- you can make connections for casual computing such as answering email and surfing the Net (small transactions). U.Va. Wireless is not intended for large transactions like downloading MP3 files or watching streaming video. The system is based on the Wi-Fi standard.
IP Address Request Form
UVaStaffOnly Menu
Contracts: Procurement Services

Unix

Awk, vi and shells

Awk

An Awk Tutorial
sed & awk
awk
The GNU Awk User's Guide
SED FAQ - Frequently asked questions or "He Sed | She Sed"

vi

vi Lover's Page
VI Helpfile
The VIM Home Page
Vim Cookbook

Bash / Bourne Shells

BASH Programming - Introduction HOW-TO
Advanced Bash-Scripting Guide
Bash Reference Manual

Other Shells and Languages

TCSH(1) Astron 6.07.02 (27 October 1996) TCSH(1)
SED FAQ
Linuxnewbie.org
Non-Programmers Tutorial For Python
The Elves Manual: Tips and Tricks

Ascii Table - ASCII character codes and html, octal, hex and decimal charts
Sed - An Introduction and Tutorial
Sed Tutorial

O and USF Pages

HIC-Up
The O Files
Uppsala Software Factory
O 5.10 Manual
The o-info Archives
A-Z 011224 ... 020710

Pymol

PyMOL Home Page
Kristian Rother's Pymol
Cameron Mura: PyMOL
Introduction to PyMOL
Rubor - Die Heimatseite von Kristian Rother
Private homepage of Kristian Rother with some bioinformatics
Gareth Stockwell's Homepage
Color Values - PyMolWiki
PyMOL scripts
http://davapc1.bioch.dundee.ac.uk/teach/pymol/index.htm
eMovie
eMovie is a tool that makes the creation of molecular animations and movies both easy and intuitive via a breakthrough storyboard interface.
PyMOL scripts
PymolRef.pdf (application/pdf Object)
Pymol Tricks
PyMol Tutorial

Mol Bio

ExPASy - Tools
Entrez-PubMed
blastP -NCBI
DNA Sequencing Home Page
The QuikChange® Primer Design Program
description
Dictionary of Cell Biology
BCM Search Launcher
Kimball's Biology Pages
SDSC Biology Workbench
American Type Culture Collection (ATCC)
GP
Codon Usage Database
Fisher - Oligo Products
Current Protocols in Cell Biology
Current Protocols in Molecular Biology
Sequence Analysis Resources on the WWW
Cell Signaling Technology
CST strives to make novel antibodies of the highest possible quality by producing them in-house and rigorously characterizing them with respect to specificity and sensitivity. Production begins with extensive purification (typically by both protein A and peptide affinity chromatography) followed by testing by our staff scientists on a wide range of applications, including ELISA, western blotting, immunoprecipitation, immunocytochemistry, immunohistochemistry and flow cytometry.
GENEWIZ - Experience, Precision, and Speed
PrimerX
Automated design of mutagenic primers for site-directed mutagenesis
GENETIC CODE
about:webservices [EBI web services]
The European Bioinformatics Institute
Mass Spec Facility
Berkeley Structural Genomics Center: Job Opportunities
nesg.swf (application/x-shockwave-flash Object)
Structural Genomics Consortium - University of Toronto - University of Oxford
SGC - Procotols on the Web
Invitrogen Online Ordering
Bio-Rad Laboratories
Mass Spectrometry
Mass spectrometry identifies and sequences proteins, identifies phosphorylation sites and compares protein amounts in samples.
Main Page - OpenWetWare
Autopublish server not def
Thermotoga maritima MSB8 Genome Page
BioInformatics | shops
Tm Operon Predictions
Context-specific BLAST
QuikChange® Primer Design Program

Sonic Youth

Official SY Site
DIG THIS! archive
Discography
Sonic Youth - Wikipedia, the free encyclopedia

Other Bands

Queens of the Stone Age
Official Offspring
Rosewater Honeyblood
www.freesofree.net :: Dinosaur Jr : J Mascis : J Mascis and the Fog
The Offspring - Polska Strona WWW -> multimedia (mp3, teledyski)
Green Day MP3 Bootlegs Downloads
swens blog: The Pixies Live mp3 bootlegs - Artists mentioned in the WIRE magazine
swens blog: Radiohead live mp3 bootlegs - Artists mentioned in the WIRE magazine
Enjoy Nirvanna
Double Live Bootleg MP3s
ween
The Official UnOfficial System of a Down Downloads
Modest Mouse
Pixies/Debaser - Live
Ant Lib Online ~ Interactive ~ Mp3 of the Week
nadasurfan.com :: audio
Wohlers.org - Meat Puppets Live Repository
Radiohead NOTFORPROFIT Area fuck EBAYBOOTSELLERS
MetallicA -LIVE-
Welcome to SDSICKBOY.COM Bootlegs for the fans from the fans

SONIC YOUTH Live Recordings Archive
Sonic Youth Live Recordings Archive.

Molscript

MolScript v2.1: Colour names
MolScript: The Official Web Site
povscript+ Homepage
POV-Ray: Documentation

POV example

Modelling in Povray
Povray beginner tutorial: Textures (pigment)
TSM - The Shape Machine - Online POV-Ray Rendering
Index - Table of Contents, POV-Ray course part 1

Pyvon
IM v6 Examples -- Multi-Images Mosaics

Random Things

Wachovia Bank

Music

Music from TV Commercials
Song Lyric Search
Epitonic.com: Hi Quality Free and Legal MP3 Music
SongMeanings | music song lyrics
Song Meanings at Songfacts
The Covers Project
Vind hier je bootleg!! - Bootlegs, opnames, concerten, mp3
Scott Gill.com. Ultimate live concert and bootleg Mp3 link portal.
Bootleg Browser
Bootleg Mp3 archive - mp3, muziek, download, bootleg, live, concert, demo, radio
Punkrockers.com
Glide Magazine - Mp3 Music Downloads: Wilco
100 Records
Download MP3 @ MP3-center.org | Free Music
Mp3-center.org | Download MP3
Seekasong.com - Mp3 & Lyrics Search
MP3 Search, free working mp3 downloads, mp3 charts & lyrics, free music search engine and all world top charts.
Rain Songs: Songs about Rain with Links to Lyrics
Over 775 rain related songs, most with links to lyrics, from folk, jazz, blues, rock, hard rock, rap, ska, children's, and rain songs from other rainy genres.
BuddhaNet Audio: Buddhist Chanting
Am I Right - Misheard Lyrics Latest Additions
Misheard lyrics aka Mondegreens for songs from the past 50 years, including country, chrisitan music, and christmas music.
Music Library, University of Virginia

ThinkIII
Mill Creek South Home
Netflix: Log In - Rent DVDs Online - Try Free

Polish Stuff

Polish Pronunciation
Polish Pronuciation
Free Polish-English-Polish Translator and online Polish Dictionary.
Portal wiedzy - Tłumacz
English Polish translation and localization services provided by TransSoft
English-Polish Words and Phrases - www.polish-translator.net - Kamous
The Alternative Polish Dictionary
Free Translation and Professional Translation Services

Travel

Student Universe
Cheap Tickets - Flights, hotels, cars, cruises, Last Minute Trips, vacation packages
Cheap Airfare, Hotel Reservations, Car Rentals - Kayak.com
Orbitz: Airline search
Southwest Airlines
The official Southwest Airlines website with Ticketless Travel reservations, Southwest Airlines schedules and fares, and general information about Southwest Airlines.

OneLook Reverse Dictionary
Postdoctoral Office: Post-Graduate Enhancement Program - Resources
Word of Mouth
Snapfish
AnnualCreditReport -revisit 8/25/06
Zeitgeist - The Movie
Animated Knots by Grog
Animated Knot-Tying for Boating, Climbing, Fishing, Scouting, Search and Rescue, and Arborists
106.1 The Corner > Home
Different is good!

Wasting Time

Drew Curtis' FARK.com
FAIL Blog: Pictures and Videos of Owned, Pwnd and Fail Moments
Fail and Epic Fail Pictures and Videos in one blog. For all those precious fail moments, whip out your camera and see your epic fail picture and videos here.
Urban Legends Reference Pages
Internet Anagram Server / I, Rearrangement Servant : anagrams, wordplay, solve, crossword, transmogrify, pangram, shuffle, fun
The Smoking Gun
BoredMuch.com - Board Dots
Daily Flash Games, Funny Pictures, Crazy Videos
Falling Sand Game - hosted by Chirag Mehta @ chir.ag
NEWS of the WEIRD - Current News

Internet Archive

Internet Archive
Internet Archive: Free Downloads: Local H

© The American Physiological Society
Horanyi Family
My Way
My Way is a web portal and search engine like Yahoo!, but without any banners, pop-ups or spam. No ads means more room for our terrific personalized features like weather, news, sports, finance, entertainment and more. And the My Way search engine is powered by Google, so it's incredibly accurate. Make My Way your way to search the Web!
Farmville
Map search for Elam, VA provided by MapQuest. The consumer's choice for online maps and directions.

Random Programs

XTALVIEW info
RasMol Home Page
Alscript
Structure Determination
X-Win32
Description of the DSSP program
VMware is Virtual Infrastructure
Microsoft Virtual PC 2004
MPlayer - The Movie Player
VMware Workstation 5
Installing & Running VNC on Redhat/RPM Linux - Linux Forums
Discuss Installing & Running VNC on Redhat/RPM Linux on the 'Linux Tutorials, HOWTO's & Reference Material' forum of Linuxforums.org. 'Installing & Running VNC on Redhat/RPM Linux' - Updated 07/09/03 Written by Jason Lambert About this site This site is a free and open place to discuss and get help with linux. Please do Register and ...
RealVNC - VNC Free Edition 4.1
The only professionally supported versions of VNC. Latest and best free and commercial versions available, over 100 million downloads.

Automation

QIAGEN - Integrated Solutions for the Life Sciences

HTML

Introduction to HTML - Table of Contents
Ask the Web Design Group
WebSter's Dictionary 2.0
Web Authoring FAQ (WDG)
HTML Goodies - Home Page
Dynamic Drive DHTML(dynamic html) & JavaScript code library!
JavaScript Kit Free JavaScripts!
The CGI Resource Index: Programs and Scripts: Perl
CGI Environmental Variables
Perl and CGI tutorials online!
Dr. Watson, v5.02
Forms in HTML documents
color chart @ Gotomy.com
Gotomy.com color chart, a rainbow of 400 plus Colors for your web page designs.

Meetings

ACA Home Page

Positions

Developing a Philosophy of Teaching Statement

2007 Protein Structure Initiative "Bottlenecks" Workshop
37th Mid-Atlantic Protein Crystallography Meeting
Keystone Symposia Conference | Structural Genomics and its Applications to Chemistry, Biology and Medicine - Program
Keystone Symposia, a non-profit organization dedicated to connecting the scientific community for the benefit of society, conducts scientific conferences on biomedical and life science topics in relaxing environments that catalyze information exchange and networking. Meetings are designed to encourage scientists to discuss the newest ideas, discoveries, and technologies with their colleagues in an atmosphere conducive to creative thinking. Symposia locations are usually winter and mountain retreats selected for relaxed environments that optimize information exchange and promote collaborative relationships.
NIGMS Protein Structures Initiative "Bottlenecks" Workshop

Funding

Monster Jobs - Get work. Network. Build a better career. Today's the day.
Find Funding Sources
(IUCr-Crystallography News Online) Employment
My Home Page
Fund for Excellence in Science and Technology (FEST): Research at the University of Virginia
Research at UVA, including links to research activities, policies, and more.
University of Virginia Patent Foundation
NIH Grant Cycle: Application to Renewal -- NIAID Research Funding
NIH Grant Cycle: Application to Renewal. These tutorials help biomedical investigators, especially new ones, plan, write, apply for, and manage the basic NIH research project grant, the R01. Developed and maintained by the National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH).
NIH Paylines & Resources « Medical Writing, Editing & Grantsmanship

SHOUTcast - HOME
Crystallographic Tutorials
Crystallographic Tutorials

Scouts

BSA Online Learning Center
Monticello District Calendar
Pack 77 Homepage
Welcome to SJAC Online - The Stonewall Jackson Area Council
Male Cub Scout Leader Uniforms
All men who are Scouting leaders wear the same uniform with shoulder loops that indicate their program (blue shoulder loops indicate Cub Scouting). ...
Cale - Cale-Home

NIH MBI Laboratory for Structural Genomics and Proteomics