Conversion of GCG .MSF file to AMPS BLOCKFILE format msf2blc: Geoffrey J. Barton (1992) PileUp MSF: >mouse Name: >rat Name: >syntenin Name: >synt2 Name: >penaeus.fa Name: >Mosquito Name: * iteration 1 A R T I L R I N L L H I H H H C X X T H T H T S M K MMMS M SSSS S LLLL L YYYY Y PPPP P SSSS S LLLL L EEEE E DDDD D LLLL M KKKK L VVVV V DDDD D KKKQ K VVVA M IIII V QQQQ Q AAAA S QQQQ Q TTTV N AAAR T YSF A SSS I AAAA A NNNS T PPPP A AAAK A SSNM A QQPP Q AAAA Q FFIL Q VFLP Q LLSV Q N H VV L DVE P ADAQ Y SSSA P AAAT P AAPA S LFII A PPPS P PPHP K DGDP D GGGP A NNNV Y G LLLL L YYYY Y PPPP P S F A N D T P S T K M D E K P S S P P M A A S KKRN I LLLL M YYYA Y PPP P EEEE D LLLL L SSSE Y QQQN E YYYY Y MMMM M GGGG G LLLL L SSSS E LLLL L NSNS S K E M I Q A N M EEES P AAEQ Q EEEEDY IIIVLM CCRQAA EEAEVP SNNSSA MMVLQH PPALVV MVVQQA VVVIPP SSSPGS GGGETT AAAGVA PPP AI ATL VV QQQDAP GGGSPQ QQQTTQ LLLASS VVVVGA AAASPV RRRGVA PPPPSI SSSGVV SSS VS VVIPPN NNNGSA YYYQGN MMMMMM VVVVVV AAAAAA PPPPPP VVVVIV TTTTSS GGGGGG NNNYAH DDDSSF AAVLPT GGGGGG IIIVLL RRRRYQ RRRRRR AAAAAA EEEEQQ IIIIVV KKKKTT QQQPNN GGGGSG IIIVII RRRRRR EEEEEE VVVIIL IIIHTV LLLLLM CCCCCC KKKKKK DDDDDG QQQESV DDDRED GGGGGK KKKKKK IIITVV GGGGGG LLLLML RRRRRR LLLLVV KKKRKQ SSSKAA IVIVII DDDDNN NNNQKK GGGGGG IIILVI FFFFFF VVVVVV QQQQCC LLLLLV VVVVVV QQQQKV AAAAKK NNNNNN SSSTSS PPPPPP AAAAAA SSSSAA LLLLLL VVVVAA GGGGGG LLLLLL RRRRRR FFFFFF GGGGGG DDDDDD QQQQQQ VVVLII LLLLLL QQQQLQ IIIIII NNNDNN GGGGSG EEERET NNNDNL CCCCVV AAAAAA GGGGGG WWWWYF SSSSSS SSSSMV DDDHED KKKKKD AAAAVV HHHHHH KKKQDK VVVVML LLLVLL KKKKKK QQQKKK AAAASS FFFSPD GGGGTK EEEDNN KKKKGN IIIIII TTTVSS MMMVLV TTTVAV IIIVIV RRRRRR DDDDDD RRRRRR PPPPPP FFFFFF EEEQGE RRRRRR TTTTTA VVIVVI TTTTTT MMMMLL HHHHHH KKKKKK DDDDDD SSSSSS SSTMTA GGGGGG HHHHHS VVVVIF GGGGGG FFFFFF IIIVQQ FFFIFF KKKKRN SSNKDN GGGGGG KKKKET IIIIII TTTVTT SSSSAA IIILLI VVVVVV KKKKKK DDDGDD SSSSSS SSSSSS AAAAAA AAAAAA RRRRRR NNNNNN GGGGGG LLLLLL LLLLLL TTTTTI DDENDD HHHHHQ HHNYHQ IIIVLL CCCCLL EEEEEE IIIVVV NNNDNN GGGGGG QQQQQQ NNNNNN VVVVVV IIIIVI GGGGGA LLLLLM KKKKKK DDDDDD AASKKK QQQKEE IIIIVI AAAMSR DDDEAE IIIIIL LLLLII SSSANS TTTTES AASACS GGGGGD TTTNQQ VVVVVV VVVVVM TTTTTT IIILVL TTTTTT IIIIII MMMIMV PPPPPP TAASSK FFFVFM IIIIVI FFFYYY EEEEKD HHHHHV IIIMMM IIIVMI KKKKKK RRRKHK MMMLML AAAPAS PPPPST SSSVSS IIIL W MMMLLL KKKHKR SSSHKG LLLTFK MMMMMM DDDDDD HHHHHH TTTSSS IIIIIV PPPPPP EEEDDD VVVALF *